Diversity and antimicrobial activity of culturable actinobacteria isolated from the sediment of Sarikum Lake

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dc.authoridTatar, Demet / 0000-0002-9317-3263
dc.authoridVeyisoğlu, Aysel / 0000-0002-1406-5513
dc.authorwosidTatar, Demet / AAY-4486-2021
dc.authorwosidTatar, Demet / AAY-4347-2021
dc.authorwosidVeyisoğlu, Aysel / AAY-9698-2021
dc.contributor.authorVeyisoğlu, Aysel
dc.contributor.authorTatar, Demet
dc.date.accessioned2021-11-01T15:05:33Z
dc.date.available2021-11-01T15:05:33Z
dc.date.issued2021
dc.departmentHitit Üniversitesi, Sağlık Hizmetleri Meslek Yüksekokulu, Tıbbi Hizmetler ve Teknikler Bölümü
dc.description.abstractIn this study, actinobacteria isolated from Sarikum Lake sediment were characterized (Sinop-Turkey). A total of 48 actinobacteria were isolated using ten selective media with the dilution-plating method. The phylogenetic analysis according to 16S rRNA gene sequencing showed that 40% of the isolated strains belong to the widely distributed genus of Streptomyces, 36% belong to genus of Micromonospora, 24% of the isolates belong to rare genera such as Rhodococcus, Plantactinospora, Nonomuraea, Actinomadura and Streptosporangium. Most of the isolated strains belong to the genus Streptomyces (40%) and two isolates may be new species. All of the isolates were tested for antimicrobial activity; only 12 isolates exhibited antimicrobial activity. Nevertheless, 11 isolates were active against gram-positive, 5 were potential against gram-negative and no isolates had any effect against pathogenic fungi. All of the 48 isolates were analysed for genes encoding nonribosomal peptide synthetases (NRPS) and polyketide synthases (PKS). In all of the 48 isolates were detected NRPS sequences, PKS-I in 28 isolates and PKS-II in 22 isolates. PKS-I - PKS-II - NRPS genes were identified in 17 isolates.
dc.description.sponsorshipSinop University Scientific Research Projects Unit [MMF-1901-16-16]en_US
dc.description.sponsorshipThis study was supported by Sinop University Scientific Research Projects Unit (MMF-1901-16-16).en_US
dc.identifier.citationVeyisoglu, A., & Tatar, D. (2021). Diversity and antimicrobial activity of culturable actinobacteria isolated from the sediment of Sarıkum Lake. Biotechnology & Biotechnological Equipment, 35(1), 1136-1146.
dc.identifier.doi10.1080/13102818.2021.1952898
dc.identifier.endpage1146en_US
dc.identifier.issn1310-2818
dc.identifier.issn1314-3530
dc.identifier.issue1en_US
dc.identifier.scopus2-s2.0-85112596476
dc.identifier.scopusqualityQ3
dc.identifier.startpage1136en_US
dc.identifier.urihttps://doi.org/10.1080/13102818.2021.1952898
dc.identifier.urihttps://hdl.handle.net/11491/7323
dc.identifier.volume35en_US
dc.identifier.wosWOS:000682339300001
dc.identifier.wosqualityQ4
dc.indekslendigikaynakWeb of Science
dc.indekslendigikaynakScopus
dc.institutionauthorTatar, Demet
dc.language.isoen
dc.publisherTaylor & Francis Ltd
dc.relation.ispartofBiotechnology & Biotechnological Equipment
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı
dc.rightsinfo:eu-repo/semantics/openAccess
dc.subjectSarikumen_US
dc.subjectActinobacteriaen_US
dc.subject16S rRNAen_US
dc.subjectAntimicrobial activityen_US
dc.subjectNRPSen_US
dc.subjectPKS-I and PKS-IIen_US
dc.titleDiversity and antimicrobial activity of culturable actinobacteria isolated from the sediment of Sarikum Lake
dc.typeArticle

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