Identification and Characterization of 33 Bacillus cereus sensu lato Isolates from Agricultural Fields from Eleven Widely Distributed Countries by Whole Genome Sequencing

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dc.authoridguzel, mustafa / 0000-0002-4750-7488
dc.authoridSanchis-Borja, Vincent / 0000-0001-9492-3866
dc.authoridSamut, Hilal / 0000-0002-1747-6641
dc.authoridAllaga, Henrietta / 0000-0001-8349-8454
dc.authoridZervas, Athanasios / 0000-0002-4706-4023
dc.authorwosidguzel, mustafa / AAO-9937-2021
dc.authorwosidSanchis-Borja, Vincent / AAP-9886-2020
dc.authorwosidSamut, Hilal / AAZ-9037-2020
dc.authorwosidZervas, Athanasios / C-8641-2015
dc.contributor.authorZervas, Athanasios
dc.contributor.authorAggerbeck, Marie Ronne
dc.contributor.authorAllaga, Henrietta
dc.contributor.authorGuzel, Mustafa
dc.contributor.authorHendriks, Marc
dc.contributor.authorJonuskiene, IIona
dc.contributor.authorHendriksen, Niels Bohse
dc.date.accessioned2021-11-01T15:05:20Z
dc.date.available2021-11-01T15:05:20Z
dc.date.issued2020
dc.department[Belirlenecek]
dc.description.abstractThe phylogeny, identification, and characterization of 33 B. cereus sensu lato isolates originating from 17 agricultural soils from 11 countries were analyzed on the basis of whole genome sequencing. Phylogenetic analyses revealed all isolates are divided into six groups, which follows the generally accepted phylogenetic division of B. cereus sensu lato isolates. Four different identification methods resulted in a variation in the identity of the isolates, as none of the isolates were identified as the same species by all four methods-only the recent identification method proposed directly reflected the phylogeny of the isolates. This points to the importance of describing the basis and method used for the identification. The presence and percent identity of the protein product of 19 genes potentially involved in pathogenicity divided the 33 isolates into groups corresponding to phylogenetic division of the isolates. This suggests that different pathotypes exist and that it is possible to differentiate between them by comparing the percent identity of proteins potentially involved in pathogenicity. This also reveals that a basic link between phylogeny and pathogenicity is likely to exist. The geographical distribution of the isolates is not random: they are distributed in relation to their division into the six phylogenetic groups, which again relates to different ecotypes with different temperature growth ranges. This means that we find it easier to analyze and understand the results obtained from the 33 B. cereus sensu lato isolates in a phylogenetic, patho-type and ecotype-oriented context, than in a context based on uncertain identification at the species level.
dc.description.sponsorshipEuropean Cooperation in Science and Technology's COST-action [16110]en_US
dc.description.sponsorshipThe research was supported by the European Cooperation in Science and Technology's COST-action 16110 Control of Human Pathogenic Microorganisms in Plant Production Systems (HUPLANTcontrol) and is a result of the training school Bacillus-identification, phylogeny and potential pathogenicity hosted by the Department of Environmental Science, Aarhus University, Denmark, and planned by N.B.H. The supporters had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.en_US
dc.identifier.doi10.3390/microorganisms8122028
dc.identifier.issn2076-2607
dc.identifier.issue12en_US
dc.identifier.pmid33353020
dc.identifier.scopus2-s2.0-85098499548
dc.identifier.scopusqualityQ2
dc.identifier.urihttps://doi.org/10.3390/microorganisms8122028
dc.identifier.urihttps://hdl.handle.net/11491/7229
dc.identifier.volume8en_US
dc.identifier.wosWOS:000603107800001
dc.identifier.wosqualityQ2
dc.indekslendigikaynakWeb of Science
dc.indekslendigikaynakScopus
dc.indekslendigikaynakPubMed
dc.institutionauthor[Belirlenecek]
dc.language.isoen
dc.publisherMdpi
dc.relation.ispartofMicroorganisms
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı
dc.rightsinfo:eu-repo/semantics/openAccess
dc.subjectecotypesen_US
dc.subjectpatho-typesen_US
dc.subjectphylogenyen_US
dc.subjectgeographical-distributionen_US
dc.subjectBacillus mycoidesen_US
dc.subjectBacillus toyonensisen_US
dc.subjectBacillus mosaicusen_US
dc.subjectBacillus thuringiensisen_US
dc.titleIdentification and Characterization of 33 Bacillus cereus sensu lato Isolates from Agricultural Fields from Eleven Widely Distributed Countries by Whole Genome Sequencing
dc.typeArticle

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